Issue 4472: Is Shared Lib Building Broken On Trunk For Mac
Update: See the new resource site for Trunk-Based Development called, err, and make sure to tell your colleagues about it and this high-throughput branching model. What it is It is a branching model for software development. Historically, it has also been called “mainline” (see later). It requires much more concentration and rigor, than making a branch (on the shared source-control server) to suit a whim. Though you could do it without Continuous Integration (CI), as many open source projects do, for enterprise development you have to have CI linked to the trunk, enforcing multiple aspects of “that commit was good”. In this article, I’m saying nothing about what developers do on their own workstations by way of ‘local’ branching to suit their hour by hour activities. This is all about the shared repo, where multiple developers integrate/merge their daily work for the greater good:) Trunk-Based Development (TBD) is where all developers (for a particular deployable unit) commit to one shared branch under source-control.
5 - in libsrc/posixio.c at line 18 replace #ifdef _MSC_VER /* Microsoft Compilers */ #include #else #include #endif with #ifdef _MSC_VER /* Microsoft Compilers */ #include typedef long ssize_t; typedef unsigned int uint32_t; #else #include #endif 6 - in putget.m4 at line 24 added #ifdef _MSC_VER #include #endif // _MSC_VER ] Run./configure. Dragonegg polly support broken? Duncan, Is the documentation for using Polly support in dragonegg correct? Trace/BPT trap: 5 (program cc1) Please submit a full bug report. Use suffix for shared modules instead of the one for > shared libraries > > On Linux there is no difference between shared modules and shared libaries, both > are. If building without Python wrapper use the --without-python option for configure. Note that the same prefix is used for installing the Python library. Mac OS X: 10.6 ships with a broken libtool which breaks the installation (and it also ships with Python 2.5, so you need an update for that).
That branch is going to be colloquially known as trunk, perhaps even named “trunk”. Devs may, on their own dev workstations, do some multi-branch development (say with Git), but when they are “done” with a change or a bug fix, it should go back to the shared trunk. It is not “done” if it is not there - watch for that little lie of omission. See the section about pull-requests below, too. Branches are made for a release.
Developers are not allowed to make branches in that shared place. Only release engineers commit to those branches, and indeed create each release branch. They may also cherry-pick individual commits to that branch if there is a desire to do so. After a release has been superseded by another, the branch is most likely deleted. Trunk as a model, has been in use for twenty years or so.
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Initially promoted by the open-source community, but less so in “enterprise-land” when ClearCase (and others) published other branching models that became dominant. Google and Facebook, today, practice a TBD style branching model.
Issue 4472 Is Shared Lib Building Broken On Trunk For Mac
If not exactly, then close enough. Either with Google and Facebook publicizing their TBD usage, the mindshare is growing for it. But there are branches! Yes there are, but concerning releases. “Branch on/for Release” is the strategy.
The release branch that will live for a short time before it is replaced by another release branch, takes everything from trunk when it is created. In terms of merges, only cherry-picks FROM trunk TO the release branch are supported. For many enterprises, only bug fixes will be merged. For Facebook (who go live from release branches ten times a week), merges of enhancements happen too, if prioritized by stakeholders. Nearly everyone agrees that bugs are fixed on the trunk and merged to the release branch, instead of fixed on the release branch and merged to trunk.
There is usually a reduced set of people that can commit to the release branch. Pull-Requests are still branches! OK, so GitHub pioneered the pull-request as a development workflow.
This is quite compatible with TBD, in that a feature/task is marshaled in a place that is not yet on the trunk/master but can be quickly. Normally, code review happens there and CI weighs in automatically with an opinion as to whether the PR branch is eligible to be merged into the trunk/master or not.
It everything is right, the the PR is merged back in the master/trunk and then deleted, leaving a smooth trunk/master timeline. Of course, the feature/task branch that’s subject of a pull-request later should be a one-person or one-pair branch, and very short lived (say a day). There are variations too - both ‘forks’ and simple branches of the origin are good pull-requests choices. Only repository read/write permissions guide which should be used. Obligations for developers Developers do not break the build with any commit. This requires a lot of discipline, and perhaps why the induction programs of Google and Facebook are lengthy for developers.
Rollback/revert of a commit is a strategy to prevent the damage (lost time) from that. More sophisticated companies will use pre-commit verifications. Devs take on habit: prove the commit is good, by synchronizing to the the trunk’s latest revisions, building from root/scratch, double-checking their functional change, then committing. In the early days, including in ThoughtWorks, devs had a “token” to prove that they had not broken the build - nobody else could hold the chicken while they were going through that proving cycle., but anything will do (thanks to Jez for the link).
Continuous Integration Continuous Integration, like Jenkins, kicks in for that commit, and runs through a build pipeline building, testing, deploying, testing some more. It may detect failures, and most likely that is because a developer didn’t prove their commit or do the token thing. Another issue might be the developer failed to add a new source file before a commit. This would be easy/quick to remedy, and a situation where “roll forward” would be OK. Changes that take “too long” to complete Developers use a technique called Branch by Abstraction (BbA) to ensure that they can complete trickier changes over a longer timespan. Martin Fowler, and has written about it too.
The risk it mitigates, is of the proliferation of branches, and those ‘temporary’ branches not completing on a schedule that has been hoped for. My own case studies From 2005, a (a US FX trading bank). Trunk-Based Development recap Quick reminder of what TBD is:. Developers commit to a single trunk more or less exclusively. Release engineers (or build-cop) create branches, and cherry-pick to branches more or less exclusively.
Only if a defect cannot be reproduced on trunk, is permission given to fix it on the release branch, and cherry-pick back to trunk. And if you get the release branch concept, it’s worth remembering:.
Trunk-Based Development means regular developers don’t commit to a release branch. Trunk-Based Development means you’re going to delete ‘old’ release branches, without merging them back to trunk. What is definitely not TBD Multiple branches that developers commit to Branches containing the same source files, that is. Refer BbA above - you should be doing it. Often senior devs would claim they have a special case, and want to do it on a branch. The pitfall is the proliferation of branches on the shared source-control server, the length of their ‘temporary’ life, and the difficulty of merging when there are lots of developers and lots of commits to one place or another. This one aspect is debated back and forth, even by people that like the concept of a trunk.
I’m going to put a line in the sand, and say that you should not make branches (on that shared repo) for features regardless of how long they are going to take, and whether they run over release dates. You should do BbA instead. Not doing a CI pipeline on that single branch Sure as a personal practice, you could prevent breakage, and many open source teams will argues they are good without CI. But for enterprise-land with tens of developers you need thorough CI. Manual version number maintenance for dependencies Dependencies of components for a buildable using can be expressed in a versioned way.
For example Log4J is currently at 1.2.17, and maintained by Apache. You’re not going to pull in their source to your source-control. You’ll depend on a binary, and bake the version number for your own build files (under source control). For your own stuff, that’s perhaps been built in a different phase of CI, your should not bake in version numbers for specific builds. Borrowing from Maven’s idioms you should instead depend on a moving target under CI.
Say ‘OurCommonThings-1.1-SNAPSHOT’, but ensure you build that in a ‘correct’ CI build phase. You’ve no intention of going live like that, but you can’t be Continuously integrating if your not compiling against, and testing with the latest version of everything. A more hardcore implementation in CI pipeline would use something other than the a controversial ‘1.1-SNAPSHOT’ I suggested above. It (and Maven per se) is a controversial thing in enterprise development. For Subversion or Perforce installations, the repository revision number could be what you use instead - ‘1.1-12345’.
Alternatively, a build number might be popular (all CI tools can provide a build number to the scripts they execute). Not doing CI from ‘root’ In regular configurations, CI should build all your stuff from root/scratch, and not depend on anything built in a prior run. Some of the more sophisticated CI infrastructures (like ThoughtWorks Studios’ Go), have a more provable/fingerprinted way of tactically using pre-build pieces, but regular installations should build from scratch (as fast as possible). This is another variation of the “latest version of everything” goal. Concurrent Development of Consecutive Releases Some enterprises work on a series of releases at the same time. They are intending to do dark-deployments using runtime toggles, but also perhaps have build-time switches to subset functionality in the resulting binary, depending on what they want to test in the CI phase.
They may have more than one CI pipelines setup for the same trunk, that proves that the “amazononeclick=true” and the “amazononeclick=false” alternates build and pass tests. Either one of the two failing is still failure for a commit, and subject to rollback/revert. You’d only set up pipelines with differing permutations of toggles for releases you’re expecting to put live.
If ‘management’ cancel the features of one release (activated by a single toggle), or reorder releases, then you reconfigure the CI pipelines as soon as you can. The dollar and time impact of that ‘re-planning’ is clarified soonest by CI, and the resulting passing/failing view of the trunk for each. You’re never going to test unreasonable toggle permutations.
Incidentally the eXtreme Programming community correctly suggests that consecutive development of consecutive releases is preferable. Misnomers Mainline is something else OK, so classically “Mainline” is a synonym of trunk, and for trunk-based-development people have been using “mainline” to describe that too. The trouble is that “mainline” also used by the ClearCase community from 1993 and refers to a wasteful and delaying branching model likes so: This is also a “late” integration design, whereas TBD is a “earliest” integrations, which is one of the critical concepts, and greatest facilitator of cost-reduction during development. The other reality of this branching model, is branches that hang off the release branch, that are supposed to be temporary. So, in summary, mainline means something else to a lot of software developers. Feature Toggles I’ve recently heard people refer to TBD as “Feature Toggles”.
Martin Fowler for the industry. It is often used in conjunction with TBD, but does not have to be. It can be used with any branching pattern, and is perhaps as old as developing software services and putting them live. At a previous client we talked of build-time toggles too. These, for maven, were profiles like so. # with amazon one click mvn -p amazononeclick install # without amazon one click mvn install Thus for that client, toggles at runtime were different to toggles that were at build time (Maven profiles), but some could be both of course.
As mentioned previously, CI pipelines are going to kicking on commit for reasonable toggle permutations. Continuous Delivery (and Deployment) This is the step up from simple TBD and CI usage.
Jez has a well known book that is essential reading. Thanks to Jez Humble for errata, and a nice quote “branching is not the problem, merging is the problem” (that’s a way of stating one problem TBD is trying to solve) Updates June 30th, 2016 - We smile on Pull Requests, of course.
Installing GHMM Prerequisites. Recent GCC, recent, working autoconf and automake. If you are running a recent Linux distribution you should be fine.
On the MacOS we recommend using to install all required packages including Python. Optional: The GHMM is self-contained, but can make use of the. Note that the GSL is GPL licensed and that will AFAIK force your code under the GPL. You need to pass -enable-gsl option to configure to use the GSL, in particular the nice collection of random number genetration. For the optional Python wrappers you need the following. If building without Python wrapper use the -without-python option for configure. Python version 2.6.x or 2.7.x.
GHMM is not yet compatible with Python 3.x releases nor with earlier releases. Note that on many Linux distributions the default installs are missing header files. You need to add the developer Python packages (which might be called python27-dev for example) and shared libs., the simplified wrapper interface generator. Optional: If you want to use the editor HMMEd you need X11 (or equivalent), Tk and Tkinter and also the Gato package.
Please use the Gato out of svn. You can check it out with svn checkout svn://svn.code.sf.net/p/gato/code/trunk/Gato Gato The Gato 1.1.2 package from or the contain a bug only affecting HMMEd. Download Please use the version out of the SVN.
There are detailed instructions at. For the most recent version you may do an anonymous checkout by calling svn checkout svn://svn.code.sf.net/p/ghmm/code/trunk/ghmm ghmm Installation In the ideal case, installation is the same as for all GNU software from source: In the ghmm directory issue the following commands. autogen.sh./configure make make install This will install the GHMM into whatever path prefix is default for autoconf on your system. Note that the same prefix is used for installing the Python library, the path for the Python install is not determined by the install location of the first python found on your PATH. That is, if for example /usr/local is the default for autoconf, the ghmm.py will end up in /usr/local/lib/pythonX.Y/site-packages. This will cause an import error if your python is not installed in /usr/local or /usr/local/lib/pythonX.Y/site-packages is not added to your PYTHONPATH environment variable. If your Python is in a non-standard location for autoconf, you probably want to install into the appropriate site-packages.
That is, if the Python interpreter invoked by typing python in your shell is /var/bin/python than most likely its library will be /var/lib/pythonX.Y and all site-specific installs should end up in /var/lib/pythonX.Y/site-packages/ by default. There is a simple work-around as follows. autogen.sh./configure -without-python make make install cd ghmmwrapper python setup.py build python setup.py install Sometimes a more fine-grained control is needed. Then you can specify the prefixes used for installation and the python interpreter to use explicitely. autogen.sh./configure -without-python -prefix=/some/path make make install cd ghmmwrapper /some/otherpath/python setup.py build /some/otherpath/python setup.py install -prefix=/yetanotherpath/ This might require setting your PYTHONPATH or LDLIBRARYPATH environment variable appropriately.